PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029703.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 491aa    MW: 54548.7 Da    PI: 6.0286
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029703.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS226.51.2e-69216488100374
         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....eg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                   a+lea++g+   H+iDfdi+ G+Q+++L+++La+++     ++    pp lRiT+v+++e   + e++ ++e+L++fA+el+++f+ +++ ++++e+
  Pbr029703.1 216 AALLEALNGSAFFHVIDFDIGLGGQYASLMKELAEKAdvasrNKgnqvPPVLRITAVVPEE--YAVETQLIRENLSQFAQELKIRFQVEFVPVRTFEM 311
                  699*******************************999766551156679**********66..999*************************9****** PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerik 284
                  +++++ ++  gE++aV l+  + r l ++    ++++ +L  ++++sP vvv+v+ e   d +++sF + f++ le++s +++sl+a++++ s+  +k
  Pbr029703.1 312 MSFKAVKFMDGEKTAVLLSPYILRRLCSQ----NNISGFLGDMRRVSPSVVVFVDGEgmGDSGTTSFRRNFVSGLEFFSIMLESLDASVAASSDVVKK 405
                  ********************999998444....44667*******************65566999********************************* PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +E +ll+++i+ +v ++ ++          Wre ++ aG+++++ls++a  qa++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr
  Pbr029703.1 406 IETFLLRPKIKAAVEAAARR-------IPPWREVFQGAGMRAMELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSAWR 488
                  **************998886.......99************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.34995468IPR005202Transcription factor GRAS
PfamPF035144.3E-67216488IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MRVPVSSPHS NNNNQSPKHS TQTNNQSVNF HLGISSLGGY EPTSVLDLRH SPSPVSAEKP  60
SKILAISDVL SHSNHDPVEW EEQVDWDSIM RDLGLHDDNV PNLKNSIPQL NSNDPQISEY  120
LHPQPFDPSQ LVHSDFNINL SEVYSSQNCY DHVINDFHQS GSWNVGVDFI EELIGAADRF  180
DSDELPLAQV ILDRLNNRLR SSSPSKPVGK PLQRAAALLE ALNGSAFFHV IDFDIGLGGQ  240
YASLMKELAE KADVASRNKG NQVPPVLRIT AVVPEEYAVE TQLIRENLSQ FAQELKIRFQ  300
VEFVPVRTFE MMSFKAVKFM DGEKTAVLLS PYILRRLCSQ NNISGFLGDM RRVSPSVVVF  360
VDGEGMGDSG TTSFRRNFVS GLEFFSIMLE SLDASVAASS DVVKKIETFL LRPKIKAAVE  420
AAARRIPPWR EVFQGAGMRA MELSQFADFQ AQCLLGKVQV RGFHVAKRQA ELVLCWHDRA  480
LVATSAWRCS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1117948870375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008363118.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-126SCL15_ARATH; Scarecrow-like protein 15
TrEMBLM5VV560.0M5VV56_PRUPE; Uncharacterized protein
STRINGPOPTR_0007s12480.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-117GRAS family protein